Marie Forest
Professeure enseignante
Department
Département des enseignements généraux
Degrees
B.Sc., M.Sc. mathématiques (UQAM), DPhil statistique (Oxford)
Office
B-1616
Email
Areas of expertise
- Statistique génétique
- Génétique des populations
- Modélisation stochastique appliquée à la génétique et l’analyse de données génomiques (expression et méthylation)
- Programmation R
Publications
- Michael J. McGuffin, Ryan Servera, Marie Forest. 2023 « Path tracing in 2D, 3D, and physicalized networks ». IEEE Transactions on Visualization and Computer Graphics
- T. Lu, V. Forgetta, J. Keller-Baruch, M. Nethander, D. Bennett, M. Forest, S. Bhatnagar, R. G. Walters, K. Lin, Z. Chen, L. Li, M. Karlsson, D. Mellström, E. Orwoll, E. V. McCloskey, J. A. Kanis, W. D. Leslie, R. J. Clarke, C. Ohlsson, C. M. T. Greenwood, J. B. Richards. 2021 « Improved prediction of fracture risk leveraging a genome-wide polygenic risk score ». Genome Medicine vol. 13 , nº 1
- Sahir R. Bhatnagar, Yi Yang, Tianyuan Lu, Erwin Schurr, J. C. Loredo-Osti, Marie Forest, Karim Oualkacha, Celia M. T. Greenwood. 2020 « Simultaneous SNP selection and adjustment for population structure in high dimensional prediction models ». Plos Genetics vol. 16 , nº 5
- V. Forgetta, J. Keller-Baruch, M. Forest, A. Durand, S. Bhatnagar, J. P. Kemp, M. Nethander, D. Evans, J. A. Morris, D. P. Kiel, F. Rivadeneira, H. Johansson, N. C. Harvey, D. Mellström, M. Karlsson, C. Cooper, D. M. Evans, R. Clarke, J. A. Kanis, E. Orwoll, E. V. McCloskey, C. Ohlsson, J. Pineau, W. D. Leslie, C. M. T. Greenwood, J. B. Richards. 2020 « Development of a polygenic risk score to improve screening for fracture risk: A genetic risk prediction study ». PLoS Medicine vol. 17 , nº 7
- Leo Speidel, Marie Forest, Sinan Shi, Simon R. Myers. 2019 « A method for genome-wide genealogy estimation for thousands of samples ». Nature Genetics vol. 51 , nº 9. p. 1321-1329
- L. M. Chen, N. Yao, E. Garg, Y. Zhu, T. T. T. Nguyen, I. Pokhvisneva, S. A. Hari Dass, E. Unternaehrer, H. Gaudreau, M. Forest, L. M. McEwen, J. L. MacIsaac, M. S. Kobor, C. M. T. Greenwood, P. P. Silveira, M. J. Meaney, K. J. O'Donnell. 2018 « PRS-on-Spark (PRSoS): A novel, efficient and flexible approach for generating polygenic risk scores ». BMC Bioinformatics vol. 19 , nº 1
- S. Das, X. Lecours Boucher, C. Rogers, C. Makowski, F. Chouinard-Decorte, K. Oros Klein, N. Beck, P. Rioux, S. T. Brown, Z. Mohaddes, C. Zweber, V. Foing, M. Forest, K. J. O’Donnell, J. Clark, M. J. Meaney, C. M. T. Greenwood, A. C. Evans. 2018 « Integration of “omics” data and phenotypic data within a unified extensible multimodal framework ». Frontiers in Neuroinformatics vol. 12
- M. Forest, K. J. O'Donnell, G. Voisin, H. Gaudreau, J. L. MacIsaac, L. M. McEwen, P. P. Silveira, M. Steiner, M. S. Kobor, M. J. Meaney, C. M. T. Greenwood. 2018 « Agreement in DNA methylation levels from the Illumina 450K array across batches, tissues, and time ». Epigenetics vol. 13 , nº 1. p. 19-32
- M. Forest, Y. Iturria-Medina, J. S. Goldman, C. L. Kleinman, A. Lovato, K. Oros Klein, A. Evans, A. Ciampi, A. Labbe, C. M. T. Greenwood. 2017 « Gene networks show associations with seed region connectivity ». Human Brain Mapping vol. 38 , nº 6. p. 3126-3140
- Shuyan Mei, Ali Karimnezhad, Marie Forest, David R. Bickel, Celia M. T. Greenwood. 2017 « The performance of a new local false discovery rate method on tests of association between coronary artery disease (CAD) and genome-wide genetic variants ». PLoS ONE vol. 12 , nº 9